Just to be clear, I do think gore-tex boots have some advantages. In cold, damp weather, a goretex liner is great to have on boots to keep water from soaking through to your feet. So for rain or snow, it's definitely a plus.
But in hotter weather (I'm talking about 90-100+ degrees, where your soles are about to melt on the ground kind of heat), a waterproof/breathable liner isn't that great. They are noticeably hotter than unlined boots, and since you most likely won't be wearing high top boots or gaiters, anything deeper than a really shallow puddle will get wet your feet wet from water coming in over the top of the boots. Once your feet are wet, a gore-tex lined boot will take forever and a day to dry out and is very uncomfortable to walk in, not to mention the blisters they will cause. A lightweight unlined boot will let most of the water out, and will continue to dry as you walk.
In certain situations, staying dry isn't as important as the ability to dry quickly. Especially for hot weather hiking, even if it rains sometimes it's not worth it to put on a poncho or rainjacket, because if you don't get soaked from the rain, you'll be soaked from the sweat.