As a practical matter, if the threads fit, it will work just fine. The real difference comes down to size and fuel mixture.
Jetboil makes smaller canisters so that you can fit it in the jetboil pot. If you have a larger canister, it will still work, but you will have to carry it separately.
The fuel mixture does not make one whit of difference in warm weather. However, when things turn cold, it can make a big difference. Those canisters hold a mixture of mostly butane with a little propane thrown in. For cold-weather use, you want the ones that use iso-butane instead of regular butane. Iso-butane evaporates at a lower temperature. Of course, the better mixture costs more (go figure).
_________________________
--
Darwin was wrong -- I'm still alive