Ah ha! That's a very good reason to carry clean water, Teslinhiker. It's one of my arguments for carrying more light than some people do. You just never know when you might need to do first aid.
I'm still curious about the drinking safety question though.
Removing the water from it's usually cooler source such as a lake or stream and leaving it untreated in an environment such as a water bottle that is subject to potentially warmer temperatures, would all in probability cause the bacteria count to increase. How much of an increase is the question, but I would think that any of the straws or chemical treatments such as MicroPur would still suffice.
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Earth and sky, woods and fields, lakes and rivers, the mountain and the sea, are excellent schoolmasters, and teach some of us more than we can ever learn from books.
John Lubbock